| 1 | RegulonDB v12.0:ã comprehensive resource of transcriptional regulation in E. coli K-12 | 1ᵉʳ autor: Salgado H., Gama-Castro S., Lara P., Mejia-Almonte C., et al. | 2024 | NUCLEIC ACIDS RESEARCH | WoS-id: 001102810900001
Scopus-id: 2-s2.0-85181777832
| 6 | 7 |
| 2 | Flexible gold standards for transcription factor regulatory interactions in Escherichia coli K-12: architecture of evidence types | Coautor: Salgado H., Lara P., Gama-Castro S., Rioualen C., et al. | 2024 | Frontiers in Genetics | WoS-id: 001186999100001
Scopus-id: 2-s2.0-85188101282
| 0 | 0 |
| 3 | RegulonDB 11.0: Comprehensive high-throughput datasets on transcriptional regulation in Escherichia coli K-12 | Coautor: Salgado H., Tierrafría V.H., Rioualen C., Lara P., et al. | 2022 | Microbial Genomics | WoS-id: 000812938700011
Scopus-id: 2-s2.0-85130765382
| 46 | 52 |
| 4 | Lisen&Curate: A platform to facilitate gathering textual evidence for curation of regulation of transcription initiation in bacteria | Coautor: Salgado H., Díaz-Rodríguez M., Lithgow-Serrano O., Guadarrama-García F., et al. | 2021 | BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS | WoS-id: 000703308500001
Scopus-id: 2-s2.0-85115326527
| 3 | 3 |
| 5 | Programmatic access to bacterial regulatory networks with regutools | Coautor: Salgado, Heladia, Chavez, Joselyn, Barberena-Jonas, Carmina, Sotelo-Fonseca, Jesus E., et al. | 2020 | Bioinformatics | WoS-id: 000606794200027
Scopus-id: 2-s2.0-85094220804
| 3 | 3 |
| 6 | RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in E. coli K-12 | 2ᵒ autor: Salgado H., Santos-Zavaleta A., Gama-Castro S., Sánchez-Pérez M., et al. | 2019 | NUCLEIC ACIDS RESEARCH | WoS-id: 000462587400034
Scopus-id: 2-s2.0-85059797142
| 236 | 243 |
| 7 | MCO: towards an ontology and unified vocabulary for a framework-based annotation of microbial growth conditions | Coautor: Salgado, H., Tierrafria, V. H., Mejia-Almonte, C., Camacho-Zaragoza, J. M., et al. | 2019 | Bioinformatics | WoS-id: 000467227300017
Scopus-id: 2-s2.0-85062289226
| 3 | 3 |
| 8 | A unified resource for transcriptional regulation in Escherichia coli K-12 incorporating high-throughput-generated binding data into RegulonDB version 10.0 | Coautor: Salgado H., Santos-Zavaleta A., Sánchez-Pérez M., Velázquez-Ramírez D.A., et al. | 2018 | BMC BIOLOGY | WoS-id: 000441842200001
Scopus-id: 2-s2.0-85051701959
| 33 | 33 |
| 9 | Using RegulonDB, the Escherichia coli K-12 Gene Regulatory Transcriptional Network Database | 1ᵉʳ autor: Salgado H., Martínez-Flores I., Bustamante V.H., Alquicira-Hernández K., et al. | 2018 | Current Protocols In Bioinformatics | Scopus-id: 2-s2.0-85050792661
| 0 | 8 |
| 10 | The transcriptional regulator SsrB is involved in a molecular switch controlling virulence lifestyles of Salmonella | Coautor: Salgado H., Pérez-Morales D., Banda M.M., Elizabeth Chau, N. Y., et al. | 2017 | PLOS PATHOGENS | WoS-id: 000406623700032
Scopus-id: 2-s2.0-85026880726
| 41 | 44 |
| 11 | RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond | 2ᵒ autor: Salgado, Heladia, Gama-Castro, Socorro, Santos-Zavaleta, Alberto, Ledezma-Tejeida, Daniela, et al. | 2016 | NUCLEIC ACIDS RESEARCH | WoS-id: 000371261700018
Scopus-id: 2-s2.0-84976874666
| 341 | 358 |
| 12 | In silico clustering of Salmonella global gene expression data reveals novel genes co-regulated with the SPI-1 virulence genes through HilD | Coautor: Salgado, Heladia, Martinez-Flores, Irma, Perez-Morales, Deyanira, Sanchez-Perez, Mishael, et al. | 2016 | SCIENTIFIC REPORTS | WoS-id: 000388557100003
Scopus-id: 2-s2.0-84998610822
| 18 | 19 |
| 13 | Immobility time during the forced swimming test predicts sensitivity to amitriptyline, whereas traveled distance in the circular corridor indicates resistance to treatment in female Wistar rats | Coautor: Salgado H., Flores-Serrano A.G., Zaldívar-Rae J., Pineda J.C. | 2015 | Neuroreport | WoS-id: 000350754300001
Scopus-id: 2-s2.0-84925136571
| 3 | 3 |
| 14 | In silico identification and experimental characterization of regulatory elements controlling the expression of the salmonella csrB and csrC genes | Coautor: Salgado, H, Martinez, LC, Martinez-Flores, I, Fernandez-Mora, M, et al. | 2014 | JOURNAL OF BACTERIOLOGY | WoS-id: 000332624300013
Scopus-id: 2-s2.0-84890942426
| 27 | 27 |
| 15 | RegulonDB v8.0: Omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more | 1ᵉʳ autor: Salgado, H, Peralta-Gil, M, Gama-Castro, S, Santos-Zavaleta, A, et al. | 2013 | NUCLEIC ACIDS RESEARCH | WoS-id: 000312893300028
Scopus-id: 2-s2.0-84876543942
| 326 | 341 |
| 16 | Evidence classification of high-throughput protocols and confidence integration in RegulonDB | Coautor: Salgado, H, Weiss, V, Medina-Rivera, A, Huerta, AM, et al. | 2013 | DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION | WoS-id: 000316174600001
Scopus-id: 2-s2.0-84879348696
| 12 | 16 |
| 17 | Transcription Factors in Escherichia coli Prefer the Holo Conformation | Coautor: Salgado H., Balderas-Martínez Y.I., Savageau M., Pérez-Rueda E., et al. | 2013 | PLOS ONE | WoS-id: 000320322400048
Scopus-id: 2-s2.0-84878913760
| 20 | 23 |
| 18 | On the trail of EHEC/EAEC-unraveling the gene regulatory networks of human pathogenic Escherichia coli bacteria | Coautor: Salgado H., Pauling J., Rottger, R, Neuner A., et al. | 2012 | INTEGR BIOL-UK | WoS-id: 000305694800003
Scopus-id: 2-s2.0-84863701397
| 6 | 7 |
| 19 | Extracting regulatory networks of escherichia coli from RegulonDB | 1ᵉʳ autor: Salgado H., Martínez-Flores I., López-Fuentes A., García-Sotelo J.S., et al. | 2012 | Methods in Molecular Biology | WoS-id: 000321878900011
Scopus-id: 2-s2.0-84855906633
| 12 | 12 |
| 20 | RegulonDB version 7.0: Transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units) | 2ᵒ autor: Salgado H., Gama-Castro S., Peralta-Gil M., Santos-Zavaleta A., et al. | 2011 | NUCLEIC ACIDS RESEARCH | WoS-id: 000285831700018
Scopus-id: 2-s2.0-78651299341
| 274 | 295 |
| 21 | Theoretical and empirical quality assessment of transcription factor-binding motifs | Coautor: Salgado H., Medina-Rivera A., Abreu-Goodger C., Thomas-Chollier M., et al. | 2011 | NUCLEIC ACIDS RESEARCH | WoS-id: 000287257500010
Scopus-id: 2-s2.0-79951570672
| 47 | 51 |
| 22 | Bioinformatics Resources for the Study of Gene Regulation in Bacteria | 2ᵒ autor: Salgado, H, Collado-Vides, J, Morett, E, Gama-Castro, S, et al. | 2009 | JOURNAL OF BACTERIOLOGY | WoS-id: 000261628100002
Scopus-id: 2-s2.0-58149495994
| 20 | 21 |
| 23 | Transcriptional regulation shapes the organization of genes on bacterial chromosomes | 2ᵒ autor: Salgado H., Janga S.C., Martínez-Antonio A. | 2009 | NUCLEIC ACIDS RESEARCH | WoS-id: 000267441800025
Scopus-id: 2-s2.0-67649872023
| 52 | 56 |
| 24 | Genome-Wide Identification of Transcription Start Sites, Promoters and Transcription Factor Binding Sites in E. coli | Coautor: Salgado, H, Mendoza-Vargas, A, Olvera, L, Olvera, M, et al. | 2009 | PLOS ONE | WoS-id: 000270880900016
Scopus-id: 2-s2.0-70449380939
| 198 | 214 |
| 25 | DOPAMINE D-2-CLASS RECEPTOR SUPERSENSITIVITY AS REFLECTED IN Ca2+ CURRENT MODULATION IN NEOSTRIATAL NEURONS | Coautor: Salgado, H, Prieto, GA, Perez-Burgos, A, Fiordelisio, T, et al. | 2009 | Neuroscience | WoS-id: 000271731700001
Scopus-id: 2-s2.0-70349748815
| 27 | 27 |
| 26 | RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation | Coautor: Salgado, H, Gama-Castro, S, Jimenez-Jacinto, V, Peralta-Gil, M, et al. | 2008 | NUCLEIC ACIDS RESEARCH | WoS-id: 000252545400022
Scopus-id: 2-s2.0-38549140094
| 374 | 402 |
| 27 | The LysR-type transcriptional regulator LeuO controls expression of several genes in Salmonella enterica serovar typhi | Coautor: Salgado, H, Hernandez-Lucas, I, Gallego-Hernandez, AL, Encarnacion, S, et al. | 2008 | JOURNAL OF BACTERIOLOGY | WoS-id: 000253554300021
Scopus-id: 2-s2.0-39749126195
| 70 | 72 |
| 28 | Immunity related genes in dipterans share common enrichment of AT-rich motifs in their 5 ' regulatory regions that are potentially involved in nucleosome formation | Coautor: Salgado H., Hernandez-Romano J., Carlos-Rivera F.J., Lamadrid-Figueroa H., et al. | 2008 | Bmc Genomics | WoS-id: 000258139200001
Scopus-id: 2-s2.0-48549089600
| 3 | 3 |
| 29 | Muscarinic M(1) modulation of N and L types of calcium channels is mediated by protein kinase C in neostriatal neurons | Coautor: Salgado, H, Perez-Burgos, A, Perez-Rosello, T, Flores-Barrera, E, et al. | 2008 | Neuroscience | WoS-id: 000259213200007
Scopus-id: 2-s2.0-50549093535
| 29 | 31 |
| 30 | Internal Versus External Effector and Transcription Factor Gene Pairs Differ in Their Relative Chromosomal Position in Escherichia coli | 2ᵒ autor: Salgado H., Janga S.C., Collado-Vides J., Martínez-Antonio A. | 2007 | JOURNAL OF MOLECULAR BIOLOGY | WoS-id: 000245672500023
Scopus-id: 2-s2.0-33947420169
| 12 | 13 |
| 31 | Conservation of transcriptional sensing systems in prokaryotes: A perspective from Escherichia coli | 1ᵉʳ autor: Salgado H., Martínez-Antonio A., Janga S.C. | 2007 | FEBS LETTERS | WoS-id: 000248473200030
Scopus-id: 2-s2.0-34447278869
| 6 | 7 |
| 32 | Automatic reconstruction of a bacterial regulatory network using Natural Language Processing | 2ᵒ autor: Salgado H., Rodríguez-Penagos C., Martínez-Flores I., Collado-Vides J. | 2007 | Bmc Bioinformatics | WoS-id: 000249274300002
Scopus-id: 2-s2.0-34548499877
| 33 | 39 |
| 33 | Coordination logic of the sensing machinery in the transcriptional regulatory network of Escherichia coli | 2ᵒ autor: Salgado H., Janga S.C., Martínez-Antonio A., Collado-Vides J. | 2007 | NUCLEIC ACIDS RESEARCH | WoS-id: 000251336000030
Scopus-id: 2-s2.0-36749095093
| 22 | 18 |
| 34 | NLP-based curation of bacterial regulatory networks | 2ᵒ autor: Salgado H., Rodríguez-Penagos C., Martínez-Flores I., Collado-Vides J. | 2007 | Lecture Notes in Computer Science | Scopus-id: 2-s2.0-37149056907
| 0 | 1 |
| 35 | Internal-sensing machinery directs the activity of the regulatory network in Escherichia coli | Coautor: Salgado H., Martínez-Antonio A., Janga S.C., Collado-Vides J. | 2006 | TRENDS IN MICROBIOLOGY | WoS-id: 000235123200007
Scopus-id: 2-s2.0-30344484891
| 69 | 73 |
| 36 | The comprehensive updated regulatory network of Escherichia coli K-12 | 1ᵉʳ autor: Salgado H., Santos-Zavaleta A., Gama-Castro S., Peralta-Gil M., et al. | 2006 | Bmc Bioinformatics | WoS-id: 000235550300001
Scopus-id: 2-s2.0-30644465547
| 50 | 48 |
| 37 | RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions. | 1ᵉʳ autor: Salgado H., Gama-Castro S., Peralta-Gil M., Díaz-Peredo E., et al. | 2006 | NUCLEIC ACIDS RESEARCH | WoS-id: 000239307700086
Scopus-id: 2-s2.0-33644873438
| 269 | 299 |
| 38 | RegulonDB (version 4.0): Transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12 | 1ᵉʳ autor: Salgado H., Gama-Castro S., Martínez-Antonio A., Díaz-Peredo E., et al. | 2004 | NUCLEIC ACIDS RESEARCH | WoS-id: 000188079000071
Scopus-id: 2-s2.0-9144270496
| 192 | 226 |
| 39 | Distribution of minigenes in the bacteriophage lambda chromosome | 2ᵒ autor: Salgado H., Oviedo N.-A., Collado-Vides J., Guarneros G. | 2004 | Gene | WoS-id: 000220856300012
Scopus-id: 2-s2.0-1642412681
| 3 | 2 |
| 40 | The mosaic structure of the symbiotic plasmid of Rhizobium etli CFN42 and its relation to other symbiotic genome compartments. | Coautor: Salgado H., González V., Bustos P., Ramírez-Romero M.A., et al. | 2003 | Genome Biology | WoS-id: 000183720100006
Scopus-id: 2-s2.0-0037562601
| 124 | 120 |
| 41 | Environmental Conditions and Transcriptional Regulation in Escherichia coli: A Physiological Integrative Approach | 2ᵒ autor: Salgado H., Martínez-Antonio A., Gama-Castro S., Gutiérrez-Ríos R.M., et al. | 2003 | BIOTECHNOLOGY AND BIOENGINEERING | WoS-id: 000187634500003
Scopus-id: 2-s2.0-0348062847
| 15 | 15 |
| 42 | RegulonDB (version 3.2): Transcriptional regulation and operon organization in Escherichia coli K-12 | 1ᵉʳ autor: Salgado H., Santos-Zavaleta A., Gama-Castro S., Millán-Zárate D., et al. | 2001 | NUCLEIC ACIDS RESEARCH | WoS-id: 000166360300017
Scopus-id: 2-s2.0-0035162782
| 180 | 190 |
| 43 | RegulonDB (version 3.0): Transcriptional regulation and operon organization in Escherichia coli K-12 | 1ᵉʳ autor: Salgado H., Santos-Zavaleta A., Gama-Castro S., Millán-Zárate D., et al. | 2000 | NUCLEIC ACIDS RESEARCH | WoS-id: 000084896300016
Scopus-id: 2-s2.0-0033971476
| 50 | 49 |
| 44 | Operons in Escherichia coli: Genomic analyses and predictions | 1ᵉʳ autor: Salgado H., Moreno-Hagelsieb G., Smith T.F., Collado-Vides J. | 2000 | PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA | WoS-id: 000087526300076
Scopus-id: 2-s2.0-0034612277
| 274 | 293 |
| 45 | RegulonDB (version 2.0): A database on transcriptional regulation in Escherichia coli | 1ᵉʳ autor: Salgado H., Santos A., Garza-Ramos U., Van Helden J., et al. | 1999 | NUCLEIC ACIDS RESEARCH | WoS-id: 000077983000012
Scopus-id: 2-s2.0-0032947086
| 31 | 33 |
| 46 | RegulonDB: A database on transcriptional regulation in Escherichia coli | 2ᵒ autor: Salgado H., Huerta A.M., Thieffry D., Collado-Vides J. | 1998 | NUCLEIC ACIDS RESEARCH | Scopus-id: 2-s2.0-0031811851
| 116 | 153 |
| 47 | Prediction of transcriptional regulatory sites in the complete genome sequence of Escherichia coli K-12 | 2ᵒ autor: Salgado H., Thieffry D., Huerta A.M., Collado-Vides J. | 1998 | Bioinformatics | Scopus-id: 2-s2.0-0031827572
| 0 | 77 |
| 48 | Definite-clause grammars for the analysis of cis-regulatory regions in E. coli. | Coautor: Salgado H., Thieffry D., Rosenblueth D.A., Huerta A.M., et al. | 1997 | Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing | Scopus-id: 2-s2.0-0031305541
| 0 | 3 |
| 49 | Syntactic recognition of regulatory regions in escherichia coli | Coautor: Salgado H., Rosenblueth D.A., Thieffry D., Huerta A.M., et al. | 1996 | Bioinformatics | WoS-id: A1996WA43400009
Scopus-id: 2-s2.0-0030474940
| 29 | 29 |
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