| 1 | Screening and Structural Characterization of Heat Shock Response Elements (HSEs) in Entamoeba histolytica Promoters | Coautor: Pérez-Rueda E., Dorantes-Palma D., Pérez-Mora S., Azuara-Liceaga E., et al. | 2024 | INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES | WoS-id: 001152736900001
Scopus-id: 2-s2.0-85183360285
| 1 | 0 |
| 2 | Interactions between the AraC/XylS-like transcriptional activator InvF of Salmonella Typhimurium, the RNA polymerase alpha subunit and the chaperone SicA | Coautor: Pérez-Rueda E., Cortés-Avalos D., Borges Farias A., Romero-González L.E., et al. | 2024 | SCIENTIFIC REPORTS | WoS-id: 001163663800097
Scopus-id: 2-s2.0-85181238777
| 1 | 1 |
| 3 | CDBProm: the Comprehensive Directory of Bacterial Promoters | 2ᵒ autor: Perez-Rueda E., Martinez G.S., Dutt M., Maya C.R., et al. | 2024 | Nar Genomics And Bioinformatics | WoS-id: 001169137700001
Scopus-id: 2-s2.0-85185968074
| 1 | 1 |
| 4 | Differential Impact of CD43 and CD28 on T-Cell Differentiation Depending on the Order of Engagement with the TCR | Coautor: Perez-Rueda E., Sandoval-Hernández M.A., Fierro N.A., Veytia-Bucheli J.I., et al. | 2024 | INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES | WoS-id: 001192563900001
Scopus-id: 2-s2.0-85189085825
| 0 | 0 |
| 5 | The interaction of InvF-RNAP is mediated by the chaperone SicA in Salmonella sp: an in silico prediction | Coautor: Perez-Rueda, E, Farias, AB, Cortés-Avalos, D, Ibarra, JA | 2024 | PEERJ | WoS-id: 001196027800004
Scopus-id: 2-s2.0-85193775010
| 0 | 0 |
| 6 | DeepReg: a deep learning hybrid model for predicting transcription factors in eukaryotic and prokaryotic genomes | Coautor: Perez-Rueda E., Ledesma-Dominguez L., Carbajal-Degante E., Moreno-Hagelsieb G. | 2024 | SCIENTIFIC REPORTS | WoS-id: 001207003700015
Scopus-id: 2-s2.0-85190824879
| 0 | 0 |
| 7 | Comprehensive comparative analysis of the periodontal pathogen Porphyromonas gingivalis: exploring the pan-genome, the reconstruction of the gene regulatory network and genome-scale metabolic network | 2ᵒ autor: Pérez-Rueda, E, Miranda-López, DC, Rojas-Vargas, J, Cortez, CH, et al. | 2024 | LETTERS IN APPLIED MICROBIOLOGY | WoS-id: 001234656600001
Scopus-id: 2-s2.0-85194940883
| 0 | 0 |
| 8 | Identification of modules and key genes associated with breast cancer subtypes through network analysis | Coautor: Pérez-Rueda E., Mares-Quiñones M.D., Galán-Vásquez E., Pérez-Ishiwara D.G., et al. | 2024 | SCIENTIFIC REPORTS | WoS-id: 001235693100093
Scopus-id: 2-s2.0-85194851089
| 0 | 2 |
| 9 | The gene regulatory network of Staphylococcus aureus ST239-SCCmecIII strain Bmb9393 and assessment of genes associated with the biofilm in diverse backgrounds | Coautor: Perez-Rueda, Ernesto, Costa M.D.O.C.E., Nascimento A.P.B.D., Martins, Yasmmin Cortes, et al. | 2023 | FRONTIERS IN MICROBIOLOGY | WoS-id: 000919810800001
Scopus-id: 2-s2.0-85147003495
| 2 | 2 |
| 10 | Structure of co-expression networks of Bifidobacterium species in response to human milk oligosaccharides | Coautor: Perez-Rueda, Ernesto, Gonzalez-Morelo, Kevin J., Galan-Vasquez, Edgardo, Melis, Felipe, et al. | 2023 | Frontiers In Molecular Biosciences | WoS-id: 000934932400001
Scopus-id: 2-s2.0-85147702417
| 2 | 2 |
| 11 | Explainable artificial intelligence as a reliable annotator of archaeal promoter regions | 2ᵒ autor: Perez-Rueda, Ernesto, Sganzerla Martinez G., Kumar, Aditya, Sarkar, Sharmilee, et al. | 2023 | SCIENTIFIC REPORTS | WoS-id: 000985232500024
Scopus-id: 2-s2.0-85147119839
| 5 | 5 |
| 12 | Identifying similarities at metabolic pathways with a strategy of Enzymatic Step Sequences | Coautor y autor de correspondencia: Perez-Rueda, Ernesto, Poot-Hernandez, Augusto Cesar, Rodriguez-Vazquez, Katya | 2023 | MethodsX | WoS-id: 001058240000001
Scopus-id: 2-s2.0-85150356242
| 0 | 0 |
| 13 | Editorial: Insights in evolutionary & genomic microbiology: 2022 | 1ᵉʳ autor: Perez-Rueda, Ernesto, Gao, Feng | 2023 | FRONTIERS IN MICROBIOLOGY | WoS-id: 001061409600001
Scopus-id: 2-s2.0-85169679872
| 0 | 0 |
| 14 | Role of transcription factors and sigma factors in bacterial stress physiology | 1ᵉʳ autor: Perez-Rueda, Ernesto, Schellhorn, Herb E., Kumar, Santosh | 2023 | FRONTIERS IN MICROBIOLOGY | WoS-id: 001086289800001
Scopus-id: 2-s2.0-85174816076
| 0 | 1 |
| 15 | A Bibliometric Analysis of Mexican Bioinformatics: A Portrait of Actors, Structure, and Dynamics | Coautor: Perez-Rueda, Ernesto, Armenta-Medina, Dagoberto, Díaz de León Castañeda C., Armenta-Medina, Alma | 2022 | BIOLOGY-BASEL | WoS-id: 000749837600001
Scopus-id: 2-s2.0-85123233229
| 3 | 3 |
| 16 | Analysis of carbohydrate-active enzymes and sugar transporters in Penicillium echinulatum: A genome-wide comparative study of the fungal lignocellulolytic system | Coautor: Perez-Rueda, Ernesto, Lenz, Alexandre Rafael, Balbinot, Eduardo, Souza de Oliveira N., et al. | 2022 | Gene | WoS-id: 000776237900007
Scopus-id: 2-s2.0-85125128937
| 5 | 7 |
| 17 | Machine learning and statistics shape a novel path in archaeal promoter annotation | 2ᵒ autor: Perez-Rueda, Ernesto, Martinez, Gustavo Sganzerla, Sarkar, Sharmilee, Kumar, Aditya, et al. | 2022 | Bmc Bioinformatics | WoS-id: 000793162400001
Scopus-id: 2-s2.0-85129860711
| 7 | 8 |
| 18 | Gene Regulatory Network Inference and Gene Module Regulating Virulence in Fusarium oxysporum | Coautor: Perez-Rueda E., Cano R., Lenz A.R., Galan-Vasquez E., et al. | 2022 | FRONTIERS IN MICROBIOLOGY | WoS-id: 000811835000001
Scopus-id: 2-s2.0-85132815523
| 2 | 3 |
| 19 | Homology-based reconstruction of regulatory networks for bacterial and archaeal genomes | Coautor: Perez-Rueda E., Romero L., Contreras-Riquelme S., Lira M., et al. | 2022 | FRONTIERS IN MICROBIOLOGY | WoS-id: 000835197500001
Scopus-id: 2-s2.0-85135204511
| 4 | 4 |
| 20 | Prototype of a Peristaltic Pump for Applications in Biological Phantoms | Coautor: Perez-Rueda, E., Sanchez-Dominguez, I, Perez-Ruiz, I. E., Chan Perez, J. | 2022 | IFMBE Proceedings | WoS-id: 000871993700109
Scopus-id: 2-s2.0-85128913763
| 0 | 0 |
| 21 | Editorial: Systems modeling: Approaches and applications-Volume II | Coautor y autor de correspondencia: Perez-Rueda, Ernesto, Garrido, Daniel, Martín A.J.M. | 2022 | Frontiers In Molecular Biosciences | WoS-id: 000880302400001
Scopus-id: 2-s2.0-85141387725
| 0 | 0 |
| 22 | Construction and analysis of gene co-expression network in the pathogenic fungus Ustilago maydis | Coautor: Pérez-Rueda E., Soberanes-Gutiérrez C.V., Castillo-Jiménez A., Galán-Vásquez E. | 2022 | FRONTIERS IN MICROBIOLOGY | WoS-id: 000899274400001
Scopus-id: 2-s2.0-85144291382
| 1 | 1 |
| 23 | Prediction of DNA-Binding Transcription Factors in Bacteria and Archaea Genomes | Coautor y autor de correspondencia: Perez-Rueda E., Ledesma L., Hernandez-Guerrero R. | 2022 | Methods in Molecular Biology | Scopus-id: 2-s2.0-85135500848
| 0 | 1 |
| 24 | A landscape for drug-target interactions based on network analysis | 2ᵒ autor y autor de correspondencia: Perez-Rueda, Ernesto, Galan-Vasquez, Edgardo | 2021 | PLOS ONE | WoS-id: 000630345000064
Scopus-id: 2-s2.0-85102772575
| 11 | 15 |
| 25 | The transcriptional activator of the bfp operon in EPEC (PerA) interacts with the RNA polymerase alpha subunit | Coautor: Perez-Rueda, Ernesto, Lara-Ochoa, Cristina, Gonzalez-Lara, Fabiola, Romero-Gonzalez, Luis E., et al. | 2021 | SCIENTIFIC REPORTS | WoS-id: 000642516500001
Scopus-id: 2-s2.0-85104562251
| 5 | 5 |
| 26 | Comparing Sediment Microbiomes in Contaminated and Pristine Wetlands along the Coast of Yucatan | Coautor: Perez-Rueda, Ernesto, Navarrete-Euan, Heron, Rodriguez-Escamilla, Zuemy, Escalante-Herrera, Karla, et al. | 2021 | Microorganisms | WoS-id: 000643318000001
Scopus-id: 2-s2.0-85104414647
| 8 | 8 |
| 27 | Metagenomic analysis and antimicrobial activity of two fermented milk kefir samples | Coautor: Perez-Rueda, Ernesto, Tenorio-Salgado, Silvia, Castelan-Sanchez, Hugo G., Davila-Ramos, Sonia, et al. | 2021 | MICROBIOLOGYOPEN | WoS-id: 000656486900002
Scopus-id: 2-s2.0-85105490466
| 19 | 19 |
| 28 | Identifying Genes Devoted to the Cell Death Process in the Gene Regulatory Network of Ustilago maydis | 2ᵒ autor: Perez-Rueda, Ernesto, Soberanes-Gutierrez, Cinthia V., Ruiz-Herrera, Jose, Galan-Vasquez, Edgardo | 2021 | FRONTIERS IN MICROBIOLOGY | WoS-id: 000657649400001
Scopus-id: 2-s2.0-85107295974
| 5 | 5 |
| 29 | DNA structural and physical properties reveal peculiarities in promoter sequences of the bacterium Escherichia coli K-12 | Coautor: Perez-Rueda, Ernesto, Martinez, Gustavo Sganzerla, de Ávila e Silva S., Kumar, Aditya | 2021 | Sn Applied Sciences | WoS-id: 000691600000001
Scopus-id: 2-s2.0-85110263542
| 5 | 4 |
| 30 | An update of the unceasingly growing and diverse AraC/XylS family of transcriptional activators | Coautor: Perez-Rueda, Ernesto, Cortes-Avalos, Daniel, Martinez-Perez, Noemy, Ortiz-Moncada, Mario A., et al. | 2021 | FEMS MICROBIOLOGY REVIEWS | WoS-id: 000709474600015
Scopus-id: 2-s2.0-85114608331
| 16 | 24 |
| 31 | Characterization of promoters in archaeal genomes based on DNA structural parameters | Coautor: Perez-Rueda, Ernesto, Martinez, Gustavo Sganzerla, Sarkar, Sharmilee, Kumar, Aditya, et al. | 2021 | MICROBIOLOGYOPEN | WoS-id: 000712037200010
Scopus-id: 2-s2.0-85118100525
| 8 | 9 |
| 32 | In Silico Identification of Chikungunya Virus B- and T-Cell Epitopes with High Antigenic Potential for Vaccine Development | Coautor: Perez-Rueda, Ernesto, Sanchez-Burgos, Gilma G., Montalvo-Marin, Nallely M., Diaz-Rosado, Edgar R. | 2021 | Viruses-Basel | WoS-id: 000744001500001
Scopus-id: 2-s2.0-85119991888
| 0 | 0 |
| 33 | Evaluation of the abundance of DNA-binding transcription factors in Prokaryotes | Coautor: Perez-Rueda, Ernesto, Sanchez, Israel, Hernandez-Guerrero, Rafael, Mendez-Monroy, Paul Erick, et al. | 2020 | GENES | WoS-id: 000514898000073
Scopus-id: 2-s2.0-85077709375
| 11 | 12 |
| 34 | Deciphering the functional diversity of DNA-binding transcription factors in Bacteria and Archaea organisms | Coautor: Perez-Rueda E., Flores-Bautista E., Hernandez-Guerrero R., Huerta-Saquero A., et al. | 2020 | PLOS ONE | WoS-id: 000564080300094
Scopus-id: 2-s2.0-85089817268
| 15 | 15 |
| 35 | Gene Regulatory Networks of Penicillium echinulatum 2HH and Penicillium oxalicum 114-2 Inferred by a Computational Biology Approach | Coautor: Perez-Rueda, Ernesto, Lenz, Alexandre Rafael, Galan-Vasquez, Edgardo, Balbinot, Eduardo, et al. | 2020 | FRONTIERS IN MICROBIOLOGY | WoS-id: 000587701800001
Scopus-id: 2-s2.0-85095788475
| 13 | 13 |
| 36 | Identification of L-asparaginases from Streptomyces strains with competitive activity and immunogenic profiles: A bioinformatic approach | 2ᵒ autor: Perez-Rueda, Ernesto, Gonzalez-Torres, Ivan, Evangelista-Martinez, Zahaed, Zarate-Romero, Andres, et al. | 2020 | PEERJ | WoS-id: 000589179400003
Scopus-id: 2-s2.0-85096093183
| 5 | 7 |
| 37 | The microbial composition in circumneutral thermal springs from chignahuapan, puebla, mexico reveals the presence of particular sulfur-oxidizing bacterial and viral communities | Coautor: Pérez-Rueda E., Castelán-Sánchez H.G., Meza-Rodríguez P.M., Carrillo E., et al. | 2020 | Microorganisms | WoS-id: 000593288600001
Scopus-id: 2-s2.0-85094610292
| 11 | 12 |
| 38 | Editorial: Systems Modeling: Approaches and Applications | 2ᵒ autor: Perez-Rueda E., Martin A.J., Garrido D. | 2020 | Frontiers In Molecular Biosciences | WoS-id: 000601096000001
Scopus-id: 2-s2.0-85098192024
| 1 | 1 |
| 39 | Prototype of a Multivariable Measurement System | Coautor y autor de correspondencia: Pérez-Rueda E., Sánchez-Domínguez I., Méndez Monroy P.E. | 2020 | IFMBE Proceedings | Scopus-id: 2-s2.0-85075696539
| 0 | 0 |
| 40 | Tracing the phylogenetic history of the Crl regulon through the Bacteria and Archaea genomes | 2ᵒ autor: Perez-Rueda, E., Santos-Zavaleta, A., Sanchez-Perez, M., Velazquez-Ramirez, D. A., et al. | 2019 | Bmc Genomics | WoS-id: 000464872800001
Scopus-id: 2-s2.0-85064404456
| 6 | 6 |
| 41 | Identification of functional signatures in the metabolism of the three cellular domains of life | Coautor: Pérez-Rueda E., Escobar-Turriza P., Hernandez-Guerrero R., Poot-Hernández A.C., et al. | 2019 | PLOS ONE | WoS-id: 000469224300018
Scopus-id: 2-s2.0-85066437462
| 7 | 7 |
| 42 | Intermediate-Salinity Systems at High Altitudes in the Peruvian Andes Unveil a High Diversity and Abundance of Bacteria and Viruses | Coautor: Perez-Rueda, Ernesto, Castelán-Sánchez H.G., Elorrieta, Paola, Romoacca, Pedro, et al. | 2019 | GENES | WoS-id: 000502296000057
Scopus-id: 2-s2.0-85074622912
| 12 | 12 |
| 43 | Identification of Modules With Similar Gene Regulation and Metabolic Functions Based on Co-expression Data | 2ᵒ autor y autor de correspondencia: Perez-Rueda, Ernesto, Galan-Vasquez, Edgardo | 2019 | Frontiers In Molecular Biosciences | WoS-id: 000516746900001
Scopus-id: 2-s2.0-85077306269
| 13 | 14 |
| 44 | The protein architecture in Bacteria and Archaea identifies a set of promiscuous and ancient domains | Coautor y autor de correspondencia: Perez-Rueda, Ernesto, Hernandez-Guerrero, Rafael, Galan-Vasquez, Edgardo | 2019 | PLOS ONE | WoS-id: 000534249400052
Scopus-id: 2-s2.0-85077029027
| 1 | 1 |
| 45 | Characterization and distribution of GHRH, PACAP, TRH, SST and IGF1 mRNAs in the green iguana | 2ᵒ autor: Perez-Rueda, Ernesto, Avila-Mendoza, Jose, Urban-Sosa, Valeria, Carranza, Martha, et al. | 2018 | GENERAL AND COMPARATIVE ENDOCRINOLOGY | WoS-id: 000416197900012
Scopus-id: 2-s2.0-85030766675
| 2 | 2 |
| 46 | Genome misclassification of Klebsiella variicola and Klebsiella quasipneumoniae isolated from plants, animals and humans | Coautor: Pérez-Rueda E., Martínez-Romero E., Rodríguez-Medina N., Beltrán-Rojel M., et al. | 2018 | SALUD PUBLICA DE MEXICO | WoS-id: 000428682100009
Scopus-id: 2-s2.0-85039867266
| 15 | 36 |
| 47 | Abundance, diversity and domain architecture variability in prokaryotic DNA-binding transcription factors | 1ᵉʳ autor: Perez-Rueda, Ernesto, Hernandez-Guerrero, Rafael, Martinez-Nunez, Mario Alberto, Armenta-Medina, Dagoberto, et al. | 2018 | PLOS ONE | WoS-id: 000429081600049
Scopus-id: 2-s2.0-85044865322
| 54 | 57 |
| 48 | Functional Prediction of Hypothetical Transcription Factors of Escherichia coli K-12 Based on Expression Data | Coautor: Perez-Rueda E., Flores-Bautista E., Cronick C.L., Fersaca A.R., et al. | 2018 | Computational and Structural Biotechnology Journal | WoS-id: 000453280300017
Scopus-id: 2-s2.0-85045375754
| 2 | 4 |
| 49 | Dissecting the Repertoire of DNA-Binding Transcription Factors of the Archaeon Pyrococcus furiosus DSM 3638 | Coautor: Perez-Rueda, Ernesto, Denis, Antonia, Martínez-Núñez M.A., Tenorio-Salgado, Silvia | 2018 | LIFE-BASEL | WoS-id: 000455417000003
Scopus-id: 2-s2.0-85055513071
| 4 | 5 |
| 50 | Identification of beta-Lactamases and beta-Lactam-Related Proteins in Human Pathogenic Bacteria using a Computational Search Approach | 2ᵒ autor: Perez-Rueda, Ernesto, Leticia Brambila-Tapia, Aniel Jessica, Barrios, Humberto, Omayra Davalos-Rodriguez, Nory, et al. | 2017 | CURRENT MICROBIOLOGY | WoS-id: 000406599500004
Scopus-id: 2-s2.0-85019253812
| 1 | 2 |
| 51 | Tracing the Repertoire of Promiscuous Enzymes along the Metabolic Pathways in Archaeal Organisms | Coautor: Perez-Rueda, Ernesto, Martínez-Núñez M.A., Rodriguez-Escamilla, Zuemy, Rodriguez-Vazquez, Katya | 2017 | LIFE-BASEL | WoS-id: 000412083600002
Scopus-id: 2-s2.0-85026769914
| 6 | 8 |
| 52 | Towards the complete proteinaceous regulome of Acinetobacter baumannii | Coautor: Perez-Rueda, Ernesto, Casella, Leila G., Weiss, Andy, Ibarra, J. Antonio, et al. | 2017 | Microbial Genomics | WoS-id: 000431154700002
Scopus-id: 2-s2.0-85061647038
| 19 | 19 |
| 53 | RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond | Coautor: Perez-Rueda, Ernesto, Gama-Castro, Socorro, Salgado, Heladia, Santos-Zavaleta, Alberto, et al. | 2016 | NUCLEIC ACIDS RESEARCH | WoS-id: 000371261700018
Scopus-id: 2-s2.0-84976874666
| 341 | 358 |
| 54 | Identification of DNA Methyltransferase Genes in Human Pathogenic Bacteria by Comparative Genomics | Coautor: Perez-Rueda, Ernesto, Leticia Brambila-Tapia, Aniel Jessica, Cesar Poot-Hernandez, Augusto, Rodriguez-Vazquez, Katya | 2016 | INDIAN JOURNAL OF MICROBIOLOGY | WoS-id: 000375783700003
Scopus-id: 2-s2.0-84952658182
| 5 | 4 |
| 55 | Identification and in silico characterization of two novel genes encoding peptidases S8 found by functional screening in a metagenomic library of Yucatan underground water | Coautor: Perez-Rueda, Ernesto, Apolinar-Hernandez, Max M., Pena-Ramirez, Yuri J., Canto-Canche, Blondy B., et al. | 2016 | Gene | WoS-id: 000384865700019
Scopus-id: 2-s2.0-84990227640
| 14 | 22 |
| 56 | Transcriptomic analysis of the process of biofilm formation in Rhizobium etli CFN42 | Coautor: Perez-Rueda, Ernesto, Reyes-Perez, Agustin, del Carmen Vargas, Maria, Hernandez, Magdalena, et al. | 2016 | ARCHIVES OF MICROBIOLOGY | WoS-id: 000386555000002
Scopus-id: 2-s2.0-84976605084
| 15 | 16 |
| 57 | Electrostatic analysis of bacterial expansins | Coautor: Pérez-Rueda E., Pastor N., Dávila S., Segovia L., et al. | 2015 | PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS | WoS-id: 000348724500002
Scopus-id: 2-s2.0-84937545667
| 21 | 22 |
| 58 | Hybrid approaches for the detection of networks of critical residues involved in functional motions in protein families | 2ᵒ autor y autor de correspondencia: PerezRueda, E, ArmentaMedina, D | 2015 | Bmc Bioinformatics | WoS-id: 000353975500009
| 1 | 0 |
| 59 | The lifestyle of prokaryotic organisms influences the repertoire of promiscuous enzymes | Coautor y autor de correspondencia: PerezRueda, E, MartinezNunez, MA, RodriguezVazquez, K | 2015 | PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS | WoS-id: 000360242000008
Scopus-id: 2-s2.0-84939575837
| 9 | 10 |
| 60 | The functional landscape bound to the transcription factors of Escherichia coli K-12 | 1ᵉʳ autor: Pérez-Rueda E., Tenorio-Salgado S., Huerta-Saquero A., Balderas-Martínez Y.I., et al. | 2015 | Computational Biology And Chemistry | WoS-id: 000364897700010
Scopus-id: 2-s2.0-84935843963
| 14 | 14 |
| 61 | Distribution of putative xenogeneic silencers in prokaryote genomes | 1ᵉʳ autor: Perez-Rueda E., Ibarra J.A. | 2015 | Computational Biology And Chemistry | WoS-id: 000364897700017
Scopus-id: 2-s2.0-84938581044
| 12 | 13 |
| 62 | The alignment of enzymatic steps reveals similar metabolic pathways and probable recruitment events in Gammaproteobacteria | Coautor y autor de correspondencia: PerezRueda, E, PootHernandez, AC, RodriguezVazquez, K | 2015 | Bmc Genomics | WoS-id: 000365284300001
Scopus-id: 2-s2.0-84946935278
| 9 | 9 |
| 63 | Comparison of Metabolic Pathways in Escherichia coli by Using Genetic Algorithms | Coautor: Perez-Rueda E., Ortegon P., Poot-Hernández A.C., Rodriguez-Vazquez K. | 2015 | Computational and Structural Biotechnology Journal | WoS-id: 000367752600034
Scopus-id: 2-s2.0-84948780395
| 4 | 4 |
| 64 | Main functions and taxonomic distribution of virulence genes in brucella melitensis 16 M | Coautor: Perez-Rueda, E, Brambila-Tapia, AJL, Armenta-Medina, D, Rivera-Gomez, N | 2014 | PLOS ONE | WoS-id: 000338709500041
Scopus-id: 2-s2.0-84903511366
| 11 | 9 |
| 65 | A functional and phylogenetic comparison of quorum sensing related genes in Brucella melitensis 16M | 2ᵒ autor y autor de correspondencia: Perez-Rueda, E, Brambila-Tapia, AJL | 2014 | JOURNAL OF MICROBIOLOGY | WoS-id: 000339600200012
Scopus-id: 2-s2.0-84940284177
| 5 | 5 |
| 66 | Characterization of pituitary growth hormone and its receptor in the green iguana (Iguana iguana) | Coautor: Perez-Rueda, E, Avila-Mendoza, J, Carranza, M, Luna, M, et al. | 2014 | GENERAL AND COMPARATIVE ENDOCRINOLOGY | WoS-id: 000341073300031
Scopus-id: 2-s2.0-84906790322
| 8 | 9 |
| 67 | Comparative genomics of nucleotide metabolism: A tour to the past of the three cellular domains of life | Coautor y autor de correspondencia: Perez-Rueda, E, Armenta-Medina, D, Segovia, L | 2014 | Bmc Genomics | WoS-id: 000342097700001
Scopus-id: 2-s2.0-84908149583
| 31 | 31 |
| 68 | Further Characterization of Functional Domains of PerA, Role of Amino and Carboxy Terminal Domains in DNA Binding | Coautor: Perez-Rueda E., Ibarra J.A., García-Zacarias C.M., Lara-Ochoa C., et al. | 2013 | PLOS ONE | WoS-id: 000316849500050
Scopus-id: 2-s2.0-84874525513
| 5 | 5 |
| 69 | Global analysis of transcriptional regulators in Staphylococcus aureus | 2ᵒ autor: Pérez-Rueda E., Ibarra J.A., Carroll R.K., Shaw L.N. | 2013 | Bmc Genomics | WoS-id: 000317411900001
Scopus-id: 2-s2.0-84874199986
| 53 | 52 |
| 70 | Transcription Factors in Escherichia coli Prefer the Holo Conformation | Coautor: Pérez-Rueda E., Balderas-Martínez Y.I., Savageau M., Salgado H., et al. | 2013 | PLOS ONE | WoS-id: 000320322400048
Scopus-id: 2-s2.0-84878913760
| 20 | 23 |
| 71 | Increments and Duplication Events of Enzymes and Transcription Factors Influence Metabolic and Regulatory Diversity in Prokaryotes | Coautor: Perez-Rueda, E, Martinez-Nunez, MA, Poot-Hernandez, AC, Rodriguez-Vazquez, K | 2013 | PLOS ONE | WoS-id: 000323369700068
Scopus-id: 2-s2.0-84880814946
| 17 | 17 |
| 72 | Lessons from the modular organization of the transcriptional regulatory network of Bacillus subtilis | Coautor: Perez-Rueda, E, Freyre-Gonzalez, JA, Manjarrez-Casas, AM, Merino, E, et al. | 2013 | BMC SYSTEMS BIOLOGY | WoS-id: 000329781200001
Scopus-id: 2-s2.0-84887535856
| 24 | 23 |
| 73 | Rhizobium etli asparaginase II An alternative for acute lymphoblastic leukemia (ALL) treatment (vol 22, pg 292, 2012) | Coautor: Perez-Rueda, E, Huerta-Saquero, A, Evangelista-Martinez, Z, Moreno-Enriquez, A | 2013 | BIOENGINEERED | WoS-id: 000336900300015
Scopus-id: 2-s2.0-84877712964
| 9 | 9 |
| 74 | Identification of volatile compounds produced by the bacterium Burkholderia tropica that inhibit the growth of fungal pathogens | Coautor: Perez-Rueda, E, Tenorio-Salgado, S, Tinoco, R, Vazquez-Duhalt, R, et al. | 2013 | Bioengineered Bugs | WoS-id: 000336903700016
Scopus-id: 2-s2.0-84883214447
| 81 | 89 |
| 75 | Biochemical characterization of recombinant L-asparaginase (AnsA) from Rhizobium etli, a member of an increasing Rhizobial-type family of L-asparaginases | Coautor: Pérez-Rueda E., Angélica M.-E., Evangelista-Martínez Z., González-Mondragón E.G., et al. | 2012 | JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY | WoS-id: 000302190800002
Scopus-id: 2-s2.0-84930479563
| 37 | 39 |
| 76 | The repertoire of DNA-binding transcription factors in prokaryotes: Functional and evolutionary lessons | 1ᵉʳ autor: Perez-Rueda E., Martinez-Nuñez M.A. | 2012 | Science Progress | Scopus-id: 2-s2.0-84866558862
| 0 | 9 |
| 77 | Identification of functional motions in the adenylate kinase (ADK) protein family by computational hybrid approaches | 2ᵒ autor: Perez-Rueda, E, Armenta-Medina, D, Segovia, L | 2011 | PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS | WoS-id: 000289528700023
Scopus-id: 2-s2.0-79954627097
| 14 | 13 |
| 78 | A comparative genome analysis of the RpoS sigmulon shows a high diversity of responses and origins | Coautor y autor de correspondencia: Perez-Rueda, E, Santos-Zavaleta, A, Gama-Castro, S | 2011 | MICROBIOLOGY-SGM | WoS-id: 000291179900015
Scopus-id: 2-s2.0-79955767137
| 8 | 9 |
| 79 | Diversity and distribution of transcription factors: Their partner domains play an important role in regulatory plasticity in bacteria | Coautor y autor de correspondencia: Perez-Rueda, E, Rivera-Gomez, N, Segovia, L | 2011 | MICROBIOLOGY-SGM | WoS-id: 000294396100013
Scopus-id: 2-s2.0-79961045630
| 11 | 13 |
| 80 | Coiled-coil domains enhance the membrane association of Salmonella type III effectors | Coautor: Pérez-Rueda E., Knodler L.A., Ibarra J.A., Yip C.K., et al. | 2011 | CELLULAR MICROBIOLOGY | WoS-id: 000294924500006
Scopus-id: 2-s2.0-80052814457
| 31 | 33 |
| 81 | New insights on gene regulation in archaea | Coautor y autor de correspondencia: Perez-Rueda, E, Tenorio-Salgado, S, Huerta-Saquero, A | 2011 | Computational Biology And Chemistry | WoS-id: 000298274400003
Scopus-id: 2-s2.0-80055000248
| 7 | 9 |
| 82 | New insights into the regulatory networks of paralogous genes in bacteria | 2ᵒ autor: Perez-Rueda, E, Martinez-Nunez, MA, Gutierrez-Rios, RM, Merino, E | 2010 | MICROBIOLOGY-SGM | WoS-id: 000274368500002
Scopus-id: 2-s2.0-76849091721
| 31 | 31 |
| 83 | Differential gene expression in Litopenaeus vannamei shrimp in response to diet changes | 2ᵒ autor: Perez-Rueda E., Chávez-Calvillo G., Lizama G., Aguilar, JJZ, et al. | 2010 | Aquaculture | WoS-id: 000275579400020
Scopus-id: 2-s2.0-76349084041
| 10 | 10 |
| 84 | Identification and Genomic Analysis of Transcription Factors in Archaeal Genomes Exemplifies Their Functional Architecture and Evolutionary Origin | 1ᵉʳ autor: Pérez-Rueda E., Janga S.C. | 2010 | MOLECULAR BIOLOGY AND EVOLUTION | WoS-id: 000277991900021
Scopus-id: 2-s2.0-77952805130
| 61 | 63 |
| 85 | Plasticity of transcriptional machinery in bacteria is increased by the repertoire of regulatory families | 2ᵒ autor y autor de correspondencia: Pérez-Rueda E., Janga S.C. | 2009 | Computational Biology And Chemistry | WoS-id: 000269864200003
Scopus-id: 2-s2.0-68749092014
| 10 | 12 |
| 86 | Scaling relationship in the gene content of transcriptional machinery in bacteria | 1ᵉʳ autor: Pérez-Rueda E., Janga S.C., Martínez-Antonio A. | 2009 | MOLECULAR BIOSYSTEMS | WoS-id: 000271727600011
Scopus-id: 2-s2.0-72949096572
| 18 | 18 |
| 87 | Protein homology detection and fold inference through multiple alignment entropy profiles | 2ᵒ autor: Perez-Rueda, E, Sanchez-Flores, A, Segovia, L | 2008 | PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS | WoS-id: 000251699100023
Scopus-id: 2-s2.0-37349012140
| 10 | 12 |
| 88 | The DNA-binding domain as a functional indicator: The case of the AraC/XylS family of transcription factors | 2ᵒ autor: Perez-Rueda, E, Ibarra, JA, Segovia, L, Puente, JL | 2008 | Genetica | WoS-id: 000254454200008
Scopus-id: 2-s2.0-41549144323
| 38 | 39 |
| 89 | The hidden universal distribution of amino acid biosynthetic networks: A genomic perspective on their origins and evolution | Coautor: Pérez-Rueda E., Hernández-Montes G., Díaz-Mejía J.J., Segovia L. | 2008 | GENOME BIOLOGY | WoS-id: 000257498000014
Scopus-id: 2-s2.0-47249165755
| 37 | 40 |
| 90 | A network perspective on the evolution of metabolism by gene duplication | 2ᵒ autor: Pérez-Rueda E., Díaz-Mejía J.J., Segovia L. | 2007 | GENOME BIOLOGY | WoS-id: 000246076300011
Scopus-id: 2-s2.0-34447502516
| 45 | 51 |
| 91 | Ligand-binding prediction in the resistance-nodulation-cell division (RND) proteins | Coautor: Perez-Rueda E., Hernandez-Mendoza A., Quinto C., Segovia L. | 2007 | Computational Biology And Chemistry | WoS-id: 000246548900007
Scopus-id: 2-s2.0-34047138431
| 6 | 6 |
| 92 | Isolation and characterization of functional insertion sequences of rhizobia | Coautor: Perez-Rueda E., Hernandez-Lucas I., Ramirez-Trujillo J.A., Gaitan M.A., et al. | 2006 | FEMS MICROBIOLOGY LETTERS | WoS-id: 000238748000004
Scopus-id: 2-s2.0-33745684181
| 8 | 9 |
| 93 | Identification and analysis of DNA-binding transcription factors in Bacillus subtilis and other Firmicutes - A genomic approach | Coautor y autor de correspondencia: Pérez-Rueda E., Moreno-Campuzano S., Janga S.C. | 2006 | Bmc Genomics | WoS-id: 000239344500001
Scopus-id: 2-s2.0-33748679406
| 62 | 64 |
| 94 | TRACTOR_DB: A database of regulatory networks in gamma-proteobacterial genomes | Coautor: Pérez-Rueda E., González A.D., Espinosa V., Vasconcelos A.T., et al. | 2005 | NUCLEIC ACIDS RESEARCH | WoS-id: 000226524300017
Scopus-id: 2-s2.0-13444270901
| 18 | 18 |
| 95 | Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea | 1ᵉʳ autor: Pérez-Rueda E., Collado-Vides J., Segovia L. | 2004 | Computational Biology And Chemistry | WoS-id: 000226382900003
Scopus-id: 2-s2.0-9544237144
| 75 | 77 |
| 96 | RegulonDB (version 3.2): Transcriptional regulation and operon organization in Escherichia coli K-12 | Coautor: Pérez-Rueda E., Salgado H., Santos-Zavaleta A., Gama-Castro S., et al. | 2001 | NUCLEIC ACIDS RESEARCH | WoS-id: 000166360300017
Scopus-id: 2-s2.0-0035162782
| 180 | 190 |
| 97 | Transcription unit conservation in the three domains of life: A perspective from Escherichia coli | Coautor: Pérez-Rueda E., Moreno-Hagelsieb G., Trevio V., Smith T.F., et al. | 2001 | TRENDS IN GENETICS | WoS-id: 000168718300004
Scopus-id: 2-s2.0-0035313453
| 36 | 41 |
| 98 | Common history at the origin of the position - Function correlation in transcriptional regulators in archaea and bacteria | 1ᵉʳ autor: Pérez-Rueda E., Collado-Vides J. | 2001 | JOURNAL OF MOLECULAR EVOLUTION | WoS-id: 000170659000002
Scopus-id: 2-s2.0-0034873196
| 62 | 61 |
| 99 | The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12 | 1ᵉʳ autor: Pérez-Rueda E., Collado-Vides J. | 2000 | NUCLEIC ACIDS RESEARCH | WoS-id: 000207916400031
Scopus-id: 2-s2.0-0343963178
| 220 | 232 |
| 100 | Genomic position analyses and the transcription machinery | 1ᵉʳ autor: Pérez-Rueda E., Gralla J.D., Collado-Vides J. | 1998 | JOURNAL OF MOLECULAR BIOLOGY | WoS-id: 000071635900001
Scopus-id: 2-s2.0-0342818061
| 28 | 27 |
| 101 | From specific gene regulation to genomic networks: A global analysis of transcriptional regulation in Escherichia coli | Coautor: Pérez-Rueda E., Thieffry D., Huerta A.M., Collado-Vides J. | 1998 | Bioessays | WoS-id: 000075208400010
Scopus-id: 2-s2.0-0032077377
| 378 | 407 |
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