SANTIAGO CASTILLO RAMIREZ



DATOS GENERALES
Nombre completo   SANTIAGO CASTILLO RAMIREZ
Máximo nivel de estudios   DOCTORADO
Antigüedad académica en la UNAM   11 años
NOMBRAMIENTOS
Vigente   INVESTIGADOR TITULAR B TC Definitivo
Centro de Ciencias Genómicas
Desde 01-02-2022
INVESTIGADOR TITULAR A TC Definitivo
Centro de Ciencias Genómicas
Desde 01-01-2020 hasta 31-01-2022
INVESTIGADOR TITULAR A TC No Definitivo
Centro de Ciencias Genómicas
Desde 01-08-2017 hasta 31-12-2019
INVESTIGADOR ASOCIADO C TC No Definitivo
Centro de Ciencias Genómicas
Desde 16-02-2014 hasta 31-07-2017
ESTIMULOS, PROGRAMAS, PREMIOS Y RECONOCIMIENTOS
* SNI II2018 - 2024
* SNI I2015 - 2017
* PRIDE D2024
* PRIDE C2019 - 2024
* EQUIVALENCIA PRIDE B2014 - 2019
INFORMACIÓN DE PUBLICACIONES
Firmas  
Castillo-Ramírez S. Castillo-Ramírez, S Castillo-Ramirez, S. Castillo-Ramirez, Santiago
ID's SCOPUS  
18435742200
ORCID's  
0000-0003-3922-7088
Áreas de conocimiento  
Biotechnology & applied microbiology Biotechnology and applied microbiology Ecology Evolutionary biology Genetics & heredity
Genetics and heredity Infectious diseases Jcs 2008 Microbiology Multidisciplinary sciences
Parasitology Pharmacology and pharmacy Plant sciences Scie jcr Virology
Agricultural and Biological Sciences (miscellaneous) Agronomy and crop science Animal Science and Zoology Artificial intelligence Biotechnology
Ecology Ecology, evolution, behavior and systematics Food Science Genetics Immunology and microbiology (miscellaneous)
Infectious diseases Medicine (miscellaneous) Microbiology Microbiology (medical) Modeling and simulation
Multidisciplinary Pharmacology, toxicology and pharmaceutics (miscellaneous) Radiology, nuclear medicine and imaging Virology
Coautorías con entidades de la UNAM  
  • Centro de Ciencias Genómicas
  • Instituto de Biología
  • Instituto de Investigaciones Biomédicas
  • Instituto de Biotecnología
  • Facultad de Ciencias
  • Facultad de Medicina
  • Facultad de Química
  • Facultad de Medicina Veterinaria y Zootecnia
  • Dirección General de Asuntos del Personal Académico
 Revistas en las que ha publicado  (37):
  1. Access Microbiology, (2023)
  2. ANTIBIOTICS-BASEL, Suiza (2020)
  3. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Estados Unidos America (2012, 2013)
  4. ARCHIVES OF VIROLOGY, Austria (2021)
  5. BMC EVOLUTIONARY BIOLOGY, Reino Unido (2008)
  6. Bmc Genomics, Reino Unido (2007, 2009, 2011, 2014, 2016)
  7. Cell Reports Methods, Estados Unidos America (2025)
  8. EMERGING INFECTIOUS DISEASES, Estados Unidos America (2019)
  9. ENVIRONMENTAL MICROBIOLOGY, Estados Unidos America (2016, 2021)
  10. EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES, Estados Unidos America (2024)
  11. Fems Microbes, (2023)
  12. Frontiers In Artificial Intelligence, Suiza (2024)
  13. FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY, Suiza (2023)
  14. FRONTIERS IN MICROBIOLOGY, Suiza (2016, 2017, 2018, 2020, 2021, 2025)
  15. GENOME BIOLOGY, Reino Unido (2012)
  16. GENOME BIOLOGY AND EVOLUTION, Reino Unido (2011, 2015, 2019, 2020)
  17. GENOME RESEARCH, Estados Unidos America (2013)
  18. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Reino Unido (2020)
  19. ISME JOURNAL, Reino Unido (2014)
  20. JOURNAL OF GLOBAL ANTIMICROBIAL RESISTANCE, Reino Unido (2024)
  21. Lancet Microbe, Países Bajos (2020, 2022, 2023)
  22. Mbio, Estados Unidos America (2016, 2023, 2024)
  23. MICROBIAL DRUG RESISTANCE, Estados Unidos America (2019, 2020)
  24. Microbial Genomics, (2022, 2023, 2024)
  25. Microbiology Resource Announcements, Estados Unidos America (2017, 2024)
  26. Microbiology Spectrum, Estados Unidos America (2022)
  27. MICROBIOLOGY-SGM, Reino Unido (2009)
  28. Microorganisms, Suiza (2021, 2023, 2024)
  29. MOLECULAR MICROBIOLOGY, Estados Unidos America (2017)
  30. mSphere, Estados Unidos America (2018, 2020, 2024)
  31. Msystems, Estados Unidos America (2021, 2022, 2024)
  32. Parasitology, Estados Unidos America (2012)
  33. PEERJ, Reino Unido (2015, 2018)
  34. PLANT SCIENCE, Irlanda (2021)
  35. PLOS ONE, Estados Unidos America (2008, 2020)
  36. PLOS PATHOGENS, Estados Unidos America (2011)
  37. SCIENTIFIC REPORTS, Reino Unido (2016, 2020)


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Documentos indexados (WoS y Scopus)

# Título del documento Autores Año Revista Fuente Citas WoS Citas Scopus
1Geographic variation in abundance and diversity of Acinetobacter baumannii Vieuvirus bacteriophagesCoautor: Castillo-Ramírez, S, Arellano-Maciel, D, Hurtado-Ramírez, JM, Camelo-Valera, LC, et al.2025FRONTIERS IN MICROBIOLOGYWoS-id: 001417604800001
Scopus-id: 2-s2.0-85217710015
00
2A core genome MLST scheme for Borrelia burgdorferi sensu lato improves insights into the evolutionary history of the species complexCoautor: Castillo-Ramirez S., Hepner S., Jolley K.A., Mourkas E., et al.2025Cell Reports MethodsWoS-id: 001421651500001
Scopus-id: 2-s2.0-85214322219
00
3Phylogenomic and phenotypic analyses highlight the diversity of antibiotic resistance and virulence in both human and non-human Acinetobacter baumanniiCoautor: Castillo-Ramírez S., Sykes E.M.E., Mateo-Estrada V., Engelberg R., et al.2024mSphereWoS-id: 001180017300002
Scopus-id: 2-s2.0-85188811804
44
4Unsupervised learning and natural language processing highlight research trends in a superbugCoautor: Castillo-Ramírez S., Méndez-Cruz C.-F., Rodríguez-Herrera J., Varela-Vega A., et al.2024Frontiers In Artificial IntelligenceWoS-id: 001195969000001
Scopus-id: 2-s2.0-85189312620
00
5Acinetobacter junii: an emerging One Health pathogenCoautor: Castillo-Ramírez S., Aguilar-Vera A., Bello-López E., Pantoja-Nuñez G.I., et al.2024mSphereWoS-id: 001201679200001
Scopus-id: 2-s2.0-85194977916
54
6Assembly collapsing versus heterozygosity oversizing: detection of homokaryotic and heterokaryotic Laccaria trichodermophora strains by hybrid genome assemblyCoautor: Castillo-Ramírez S., Ángeles-Argáiz R.E., Aguirre-Beltrán L.F.L., Hernández-Oaxaca D., et al.2024Microbial GenomicsWoS-id: 001222187300009
Scopus-id: 2-s2.0-85189058384
11
7On the road to genomically defining bacterial intra-species units1ᵉʳ autor y autor de correspondencia: Castillo-Ramírez S.2024MsystemsWoS-id: 001258363100001
Scopus-id: 2-s2.0-85199689986
01
8Characterization of a colistin resistant, hypervirulent hospital isolate of Acinetobacter courvalinii from CanadaCoautor: Castillo-Ramírez S., Sykes E.M.E., Mateo-Estrada V., Muzaleva A., et al.2024EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASESWoS-id: 001280275600002
Scopus-id: 2-s2.0-85200001111
00
9Genomic and Phylogenomic Characterization of Carbapenem-resistant Pseudomonas aeruginosa ?High-risk? Clone O4/ExoS+/ST654 Circulating in Chilean HospitalsCoautor: Castillo-Ramírez S., Opazo-Capurro A., Aguilar-Vera O.A., González-Muñoz P., et al.2024JOURNAL OF GLOBAL ANTIMICROBIAL RESISTANCEWoS-id: 001284400900001
Scopus-id: 2-s2.0-85199718627
00
10Host population structure and species resolution reveal prophage transmission dynamicsCoautor: Castillo-Ramírez S., Tenorio-Carnalla K., Aguilar-Vera A., Hernández-Alvarez A.J., et al.2024MbioWoS-id: 001321191800002
Scopus-id: 2-s2.0-85206957703
32
11Description of genome sequences of arthropod-associated spirochetes of the genus EntomospiraCoautor: Castillo-Ramirez, S, Sikutova, S, Graña-Miraglia, L, Vancová, M, et al.2024Microbiology Resource AnnouncementsWoS-id: 001355865500001
Scopus-id: 2-s2.0-85216329273
00
12Geography, Antimicrobial Resistance, and Genomics of Salmonella enterica (Serotypes Newport and Anatum) from Meat in Mexico (2021?2023)Coautor: Castillo-Ramírez S., Reynoso E.C., Delgado-Suárez E.J., Hernández-Pérez C.F., et al.2024MicroorganismsWoS-id: 001384663000001
Scopus-id: 2-s2.0-85213274101
00
13Editorial: Mobile genetic elements as dissemination drivers of multidrug-resistant Gram-negative bacteriaCoautor: Castillo-Ramirez, Santiago, Nodari, Carolina Silva, Opazo-Capurro, Andres, Mattioni Marchetti V.2023FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGYWoS-id: 000962109000001
Scopus-id: 2-s2.0-85151320699
11
14Acinetobacter baumannii from grass: novel but non- resistant clonesCoautor: Castillo-Ramirez, Santiago, Mateo-Estrada, Valeria, Tyrrell, Ciara, Evans, Benjamin A., et al.2023Microbial GenomicsWoS-id: 001037022200005
Scopus-id: 2-s2.0-85164846616
1213
15Acinetobacter baumannii IC2 and IC5 Isolates with Co-Existing blaOXA-143-like and blaOXA-72 and Exhibiting Strong Biofilm Formation in a Mexican Hospital2ᵒ autor: Castillo-Ramirez, Santiago, Moreno-Manjon, Julia, Jolley, Keith A., Maiden M.C.J., et al.2023MicroorganismsWoS-id: 001076932900001
Scopus-id: 2-s2.0-85172778159
45
16Genomic epidemiology of Acinetobacter baumannii goes global1ᵉʳ autor y autor de correspondencia: Castillo-Ramírez S.2023MbioWoS-id: 001099943600001
Scopus-id: 2-s2.0-85182874927
79
17Pandrug-resistant Acinetobacter baumannii from different clones and regions in Mexico have a similar plasmid carrying the blaOXA-72 geneCoautor: Castillo-Ramírez, S, Fernandez-Vázquez, JL, Hernández-González, IL, Jarillo-Quijada, MD, et al.2023FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGYWoS-id: 001134207300001
Scopus-id: 2-s2.0-85181206328
22
18The importance of Acinetobacter baumannii from non-human sources1ᵉʳ autor y autor de correspondencia: Castillo-Ramírez S.2023Lancet MicrobeWoS-id: 001164949500001
Scopus-id: 2-s2.0-85172797958
1010
19The Acinetobacter baumannii website (Ab-web): a multidisciplinary knowledge hub, communication platform, and workspaceCoautor: Castillo-Ramírez S., Karah N., Mateo-Estrada V., Higgins P.G., et al.2023Fems MicrobesWoS-id: 001327605400001
Scopus-id: 2-s2.0-85177494395
22
20Emergence of ADC-5 Cephalosporinase in environmental Acinetobacter baumannii from a German tank milk with a novel Sequence TypeCoautor: Castillo-Ramírez S., Sykes E.M.E., Mateo-Estrada V., Zhanel G., et al.2023Access MicrobiologyScopus-id: 2-s2.0-85188888234
02
21The promiscuous and highly mobile resistome of Acinetobacter baumanniiCoautor y autor de correspondencia: Castillo-Ramirez, Santiago, Hernandez-Gonzalez, Ismael L., Mateo-Estrada, Valeria2022Microbial GenomicsWoS-id: 000752012700008
Scopus-id: 2-s2.0-85123816752
2223
22Acinetobacter baumannii Sampled from Cattle and Pigs Represent Novel ClonesCoautor: Castillo-Ramirez, Santiago, Mateo-Estrada, Valeria, Vali, Leila, Hamouda, Ahmed, et al.2022Microbiology SpectrumWoS-id: 000819227400001
Scopus-id: 2-s2.0-85137137953
1519
23Beyond microbial core genomic epidemiology: towards pan genomic epidemiology1ᵉʳ autor y autor de correspondencia: Castillo-Ramírez S.2022Lancet MicrobeWoS-id: 000821505500003
Scopus-id: 2-s2.0-85127192545
77
24Mining of Thousands of Prokaryotic Genomes Reveals High Abundance of Prophages with a Strictly Narrow Host RangeCoautor: Castillo-Ramirez, Santiago, Lopez-Leal, Gamaliel, Carolina Camelo-Valera, Laura, Manuel Hurtado-Ramirez, Juan, et al.2022MsystemsWoS-id: 000832242700003
Scopus-id: 2-s2.0-85137130555
2828
25Zoonotic Acinetobacter baumannii: the need for genomic epidemiology in a One Health context1ᵉʳ autor y autor de correspondencia: Castillo-Ramirez, Santiago2022Lancet MicrobeWoS-id: 000925118600005
Scopus-id: 2-s2.0-85142853513
1617
26A novel vieuvirus from multidrug-resistant Acinetobacter baumanniiCoautor: Castillo-Ramirez, Santiago, Lopez-Leal, Gamaliel, Reyes-Munoz, Alejandro, Santamaria, Rosa Isela, et al.2021ARCHIVES OF VIROLOGYWoS-id: 000622225200001
Scopus-id: 2-s2.0-85101736933
99
27Editorial: Genomic Basis of Antibiotic Resistance and Virulence in AcinetobacterCoautor y autor de correspondencia: Castillo-Ramirez, Santiago, Evans, Benjamin A., Kumar, Ayush2021FRONTIERS IN MICROBIOLOGYWoS-id: 000639412300001
Scopus-id: 2-s2.0-85104087033
88
28The Population Structure of Borrelia lusitaniae Is Reflected by a Population Division of Its Ixodes VectorCoautor: Castillo-Ramirez, Santiago, Norte, Ana Claudia, Boyer, Pierre H., Chvostac, Michal, et al.2021MicroorganismsWoS-id: 000662375600001
Scopus-id: 2-s2.0-85104790960
1720
29Reassessing the evolution of the 1-deoxy-D-xylulose 5-phosphate synthase family suggests a possible novel function for the DXS class 3 proteinsCoautor: Castillo-Ramirez, Santiago, de Luna-Valdez, Luis, Chenge-Espinosa, Marel, Hernandez-Munoz, Arihel, et al.2021PLANT SCIENCEWoS-id: 000684980800002
Scopus-id: 2-s2.0-85108086027
1111
30Accessory Genomic Epidemiology of Cocirculating Acinetobacter baumannii ClonesCoautor: Castillo-Ramirez, Santiago, Mateo-Estrada, Valeria, Fernández-Vázquez J.L., Moreno-Manjon, Julia, et al.2021MsystemsWoS-id: 000709832000014
Scopus-id: 2-s2.0-85111117907
1718
31Non-clinical settings - the understudied facet of antimicrobial drug resistance1ᵉʳ autor: Castillo-Ramirez, Santiago, Ghaly, Timothy, Gillings, Michael2021ENVIRONMENTAL MICROBIOLOGYWoS-id: 000718001400001
Scopus-id: 2-s2.0-85119132906
1211
32High Phenotypic and Genotypic Diversity of Enterococcus faecium from Clinical and Commensal Isolates in Third Level HospitalCoautor: Castillo-Ramirez, Santiago, Mayoral-Teran, Claudia, Flores-Moreno, Karen, Cevallos, Miguel A., et al.2020MICROBIAL DRUG RESISTANCEWoS-id: 000487289800001
Scopus-id: 2-s2.0-85081646332
11
33Origin of OXA-23 Variant OXA-239 from a Recently Emerged Lineage of Acinetobacter baumannii International Clone VCoautor: Castillo-Ramirez, Santiago, Graña-Miraglia L., Evans, Benjamin A., Lopez-Jacome, Luis E., et al.2020mSphereWoS-id: 000510849900027
Scopus-id: 2-s2.0-85077689764
3430
34Prophages Encode Antibiotic Resistance Genes in Acinetobacter baumanniiCoautor: Castillo-Ramirez, Santiago, Lopez-Leal, Gamaliel, Santamaria, Rosa Isela, Cevallos, Miguel Angel, et al.2020MICROBIAL DRUG RESISTANCEWoS-id: 000517967000001
Scopus-id: 2-s2.0-85085708378
2324
35Rejection of the name Borreliella and all proposed species comb. nov. placed therein2ᵒ autor: Castillo-Ramirez, Santiago, Margos, Gabriele, Cutler, Sally, Dessau, Ram B., et al.2020INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGYWoS-id: 000537392000080
Scopus-id: 2-s2.0-85085630592
2126
36Chromosome Architecture and Gene Content of the Emergent Pathogen Acinetobacter haemolyticusCoautor: Castillo-Ramirez, Santiago, Castro-Jaimes, Semiramis, Bello-Lopez, Elena, Velazquez-Acosta, Consuelo, et al.2020FRONTIERS IN MICROBIOLOGYWoS-id: 000540562000001
Scopus-id: 2-s2.0-85086177209
57
37Structure and Evolution ofAcinetobacter baumanniiPlasmidsCoautor: Castillo-Ramirez, Santiago, Salgado-Camargo, Abraham D., Castro-Jaimes, Semiramis, Gutierrez-Rios, Rosa-Maria, et al.2020FRONTIERS IN MICROBIOLOGYWoS-id: 000548629300001
Scopus-id: 2-s2.0-85087288214
5658
38Characterization of Extremely Drug-Resistant and HypervirulentAcinetobacter baumanniiAB030Coautor: Castillo-Ramirez, Santiago, Singh, Manu, De Silva, P. Malaka, Al-Saadi, Yasser, et al.2020ANTIBIOTICS-BASELWoS-id: 000551677900001
Scopus-id: 2-s2.0-85086654384
1012
39Phylogeographical analyses and antibiotic resistance genes of acinetobacter johnsonii highlight its clinical relevance1ᵉʳ autor: Castillo-Ramirez, Santiago, Mateo-Estrada, Valeria, Gonzalez-Rocha, Gerardo, Opazo-Capurro, Andres2020mSphereWoS-id: 000571787800014
Scopus-id: 2-s2.0-85087472091
1417
40High mortality in an outbreak of multidrug resistant Acinetobacter baumannii infection introduced to an oncological hospital by a patient transferred from a general hospitalCoautor: Castillo-Ramirez, Santiago, Cornejo-Juarez, Patricia, Cevallos M.A., Castro-Jaimes, Semiramis, et al.2020PLOS ONEWoS-id: 000575913700010
Scopus-id: 2-s2.0-85088529108
3335
41Spirochetes isolated from arthropods constitute a novel genus Entomospira genus novum within the order SpirochaetalesCoautor: Castillo-Ramirez, Santiago, Grana-Miraglia, Lucia, Sikutova, Silvie, Vancova, Marie, et al.2020SCIENTIFIC REPORTSWoS-id: 000582686700003
Scopus-id: 2-s2.0-85092468734
76
42Origin and Evolutionary Dynamics of the miR2119 and ADH1 Regulatory Module in LegumesCoautor: Castillo-Ramírez S., De la Rosa C., Lozano L., Covarrubias A.A., et al.2020GENOME BIOLOGY AND EVOLUTIONWoS-id: 000606568300012
Scopus-id: 2-s2.0-85097570912
99
43Antibiotic-resistant Acinetobacter baumannii is a One Health problem2ᵒ autor y autor de correspondencia: Castillo-Ramirez, Santiago, Hernandez-Gonzalez, Ismael L.2020Lancet MicrobeWoS-id: 000612985800006
Scopus-id: 2-s2.0-85103937781
3134
44Inaccurate multilocus sequence typing of Acinetobacter baumannii1ᵉʳ autor: Castillo-Ramirez, Santiago, Grana-Miraglia, Lucia2019EMERGING INFECTIOUS DISEASESWoS-id: 000453546600034
Scopus-id: 2-s2.0-85058757101
3940
45Unexplored genetic diversity of multidrug- A nd extremely drug-resistant acinetobacter baumannii isolates from tertiary hospitals in HondurasCoautor: Castillo-Ramírez S., López-Leal G., Zuniga-Moya J.C., Castro-Jaimes S., et al.2019MICROBIAL DRUG RESISTANCEWoS-id: 000470692800009
Scopus-id: 2-s2.0-85066856689
1413
46Phylogenomics Reveals Clear Cases of Misclassification and Genus-Wide Phylogenetic Markers for AcinetobacterCoautor: Castillo-Ramirez, Santiago, Mateo-Estrada, Valeria, Graña-Miraglia L., Lopez-Leal, Gamaliel2019GENOME BIOLOGY AND EVOLUTIONWoS-id: 000491234700008
Scopus-id: 2-s2.0-85072133460
4143
47Invasive methicillin-resistant Staphylococcus aureus USA500 strains from the U.S. Emerging Infections Program constitute three geographically distinct lineages2ᵒ autor: Castillo-Ramirez, S., Frisch, M. B., Petit, III, R. A., Farley, M. M., et al.2018mSphereWoS-id: 000437234900047
Scopus-id: 2-s2.0-85048219574
2627
48Phylogenomic classification and the evolution of Clonal complex 5 methicillin-resistant Staphylococcus aureus in the Western HemisphereCoautor: Castillo-Ramirez, Santiago, Challagundla, Lavanya, Reyes, Jinnethe, Rafiqullah, Iftekhar, et al.2018FRONTIERS IN MICROBIOLOGYWoS-id: 000442365300002
Scopus-id: 2-s2.0-85052615715
6668
49Phylogenomics picks out the par excellence markers for species phylogeny in the genus StaphylococcusCoautor: Castillo-Ramirez, Santiago, Grana-Miraglia, Lucia, Arreguin-Perez, Cesar, Lopez-Lear, Gamaliel, et al.2018PEERJWoS-id: 000448174400007
Scopus-id: 2-s2.0-85055710327
1213
501,2-Diacylglycerol choline phosphotransferase catalyzes the final step in the unique Treponema denticola phosphatidylcholine biosynthesis pathwayCoautor: Castillo-Ramirez, Santiago, Angel Vences-Guzman, Miguel, Goetting-Minesky, M. Paula, Guan, Ziqiang, et al.2017MOLECULAR MICROBIOLOGYWoS-id: 000394703900010
Scopus-id: 2-s2.0-85013844830
45
51Rapid Gene Turnover as a Significant Source of Genetic Variation in a Recently Seeded Population of a Healthcare-Associated PathogenCoautor: Castillo-Ramirez, Santiago, Grana-Miraglia, Lucia, Lozano, Luis F., Velazquez, Consuelo, et al.2017FRONTIERS IN MICROBIOLOGYWoS-id: 000411358600001
Scopus-id: 2-s2.0-85029765129
4041
52Complete genome sequence of a blaOXA-58-producing Acinetobacter baumannii strain isolated from a Mexican hospitalCoautor: Castillo-Ramirez, Santiago, Perez-Oseguera, Angeles, Castro-Jaimes, Semiramis, Salgado-Camargo A.D., et al.2017Microbiology Resource AnnouncementsWoS-id: 000460732900019
Scopus-id: 2-s2.0-85029217087
35
53Trans-Atlantic exchanges have shaped the population structure of the Lyme disease agent Borrelia burgdorferi sensu stricto1ᵉʳ autor: Castillo-Ramirez, S., Fingerle, V., Jungnick, S., Straubinger, R. K., et al.2016SCIENTIFIC REPORTSWoS-id: 000371603600001
Scopus-id: 2-s2.0-84960345018
2122
54Species-specific diversity of novel bacterial lineages and differential abundance of predicted pathways for toxic compound degradation in scorpion gut microbiotaCoautor: Castillo-Ramirez, Santiago, Bolanos, Luis M., Rosenblueth, Monica, Figuier-Huttin, Gilles, et al.2016ENVIRONMENTAL MICROBIOLOGYWoS-id: 000375481200008
Scopus-id: 2-s2.0-84939226193
1718
55Whole-Genome Sequencing for Routine Pathogen Surveillance in Public Health: a Population Snapshot of Invasive Staphylococcus aureus in EuropeCoautor: Castillo-Ramirez, Santiago, Aanensen, David M., Feil, Edward J., Holden, Matthew T. G., et al.2016MbioWoS-id: 000383440300020
Scopus-id: 2-s2.0-84978959412
146163
56Recurrent evolution of host and vector association in bacteria of the Borrelia burgdorferi sensu lato species complexCoautor: Castillo-Ramirez, Santiago, Becker, Noemie S., Margos, Gabriele, Blum, Helmut, et al.2016Bmc GenomicsWoS-id: 000383472900003
Scopus-id: 2-s2.0-84987881547
3741
57Dynamics of genome change among Legionella speciesCoautor: Castillo-Ramirez, Santiago, Joseph, Sandeep J., Cox, Daniel, Wolff, Bernard, et al.2016SCIENTIFIC REPORTSWoS-id: 000383643900001
Scopus-id: 2-s2.0-84987985183
2020
58Evolution of a Sigma Factor: An All-In-One of Gene Duplication, Horizontal Gene Transfer, Purifying Selection, and Promoter DifferentiationCoautor y autor de correspondencia: Castillo-Ramírez S., López-Leal G., Cevallos M.A.2016FRONTIERS IN MICROBIOLOGYWoS-id: 000443440800001
Scopus-id: 2-s2.0-84966262697
1111
59Population structure of neisseria gonorrhoeae based on whole genome data and its relationship with antibiotic resistanceCoautor: Castillo-Ramirez S., Ezewudo M.N., Joseph S.J., Dean D., et al.2015PEERJWoS-id: 000350765400002
Scopus-id: 2-s2.0-84926433512
5656
60Chlamydiaceae genomics reveals interspecies admixture and the recent evolution of Chlamydia abortus infecting lower mammalian species and humansCoautor: Castillo-Ramirez S., Joseph S.J., Marti H., Didelot X., et al.2015GENOME BIOLOGY AND EVOLUTIONWoS-id: 000366498500003
Scopus-id: 2-s2.0-84956887775
2933
61Microevolution of renibacterium salmoninarum: Evidence for intercontinental dissemination associated with fish movementsCoautor: Castillo-Ramirez S., Brynildsrud O., Feil E.J., Bohlin J., et al.2014ISME JOURNALWoS-id: 000333189700002
Scopus-id: 2-s2.0-84899462472
3132
62RNA-Seq analysis of the multipartite genome of Rhizobium etli CE3 shows different replicon contributions under heat and saline shockCoautor: Castillo-Ramírez S., López-Leal G., Tabche M.L., Mendoza-Vargas A., et al.2014Bmc GenomicsWoS-id: 000341597700001
Scopus-id: 2-s2.0-84907292963
2728
63Genetic relationships of Vibrio parahaemolyticus isolates from clinical, human carrier, and environmental sources in Thailand, determined by multilocus sequence analysisCoautor: Castillo-Ramírez S., Theethakaew C., Feil E.J., Aanensen D.M., et al.2013APPLIED AND ENVIRONMENTAL MICROBIOLOGYWoS-id: 000316183500029
Scopus-id: 2-s2.0-84875547164
5661
64A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemicCoautor: Castillo-Ramírez S., Holden M.T.G., Hsu L.-Y., Kurt K., et al.2013GENOME RESEARCHWoS-id: 000316920500007
Scopus-id: 2-s2.0-84875741847
347364
65Two boundaries separate borrelia burgdorferi populations in north americaCoautor: Castillo-Ramírez S., Margos G., Tsao J.I., Girard Y.A., et al.2012APPLIED AND ENVIRONMENTAL MICROBIOLOGYWoS-id: 000307611800010
Scopus-id: 2-s2.0-84866182014
3741
66Phylogeography of Lyme borreliosis-group spirochetes and methicillin-resistant Staphylococcus aureus2ᵒ autor: Castillo-Ramírez S., Margos G., Hoen A.G.2012ParasitologyWoS-id: 000311904900012
Scopus-id: 2-s2.0-84870544166
1213
67Phylogeographic variation in recombination rates within a global clone of methicillin-resistant Staphylococcus aureus1ᵉʳ autor: Castillo-Ramírez S., Corander J., Marttinen P., Aldeljawi M., et al.2012GENOME BIOLOGYWoS-id: 000315869800015
Scopus-id: 2-s2.0-84901416262
8183
68Transcriptional profiling of fetal hypothalamic TRH neuronsCoautor: Castillo-Ramírez S., Guerra-Crespo M., Pérez-Monter C., Janga S.C., et al.2011Bmc GenomicsWoS-id: 000292249600001
Scopus-id: 2-s2.0-79955535158
78
69The impact of recombination on dN/dS within recently emerged bacterial clones1ᵉʳ autor: Castillo-Ramírez S., Harris S.R., Holden M.T.G., He M., et al.2011PLOS PATHOGENSWoS-id: 000293339300022
Scopus-id: 2-s2.0-79960967240
7174
70A very early-branching staphylococcus aureus lineage lacking the carotenoid pigment staphyloxanthinCoautor: Castillo-Ramirez S., Holt D.C., Holden M.T.G., Tong S.Y.C., et al.2011GENOME BIOLOGY AND EVOLUTIONWoS-id: 000295693200041
Scopus-id: 2-s2.0-84855753946
135143
71The Rhizobium etli RpoH1 and RpoH2 sigma factors are involved in different stress responsesCoautor: Castillo-Ramirez, S, Martinez-Salazar, JM, Sandoval-Calderon, M, Guo, XW, et al.2009MICROBIOLOGY-SGMWoS-id: 000263428900007
Scopus-id: 2-s2.0-62249222127
4948
72Horizontal gene transfer and diverse functional constrains within a common replication-partitioning system in Alphaproteobacteria: the repABC operon1ᵉʳ autor: Castillo-Ramirez, S, Vazquez-Castellanos, JF, Gonzalez, V, Cevallos, MA2009Bmc GenomicsWoS-id: 000272357900001
Scopus-id: 2-s2.0-71049177075
3535
73Factors affecting the concordance between orthologous gene trees and species tree in bacteria1ᵉʳ autor: Castillo-Ramirez, S, Gonzalez, V2008BMC EVOLUTIONARY BIOLOGYWoS-id: 000263053200001
Scopus-id: 2-s2.0-58149301586
1919
74A Common Genomic Framework for a Diverse Assembly of Plasmids in the Symbiotic Nitrogen Fixing Bacteria2ᵒ autor: Castillo-Ramirez S., Crossman L.C., McAnnula C., Lozano L., et al.2008PLOS ONEWoS-id: 000263288200032
Scopus-id: 2-s2.0-49749105565
5957
75Rapid evolutionary change of common bean (Phaseolus vulgaris L) plastome, and the genomic diversification of legume chloroplasts2ᵒ autor: Castillo-Ramírez S., Guo X., González V., Bustos P., et al.2007Bmc GenomicsWoS-id: 000248702100001
Scopus-id: 2-s2.0-34547789868
9283
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Documentos no indexados (Humanindex)

# Título del documento ISSN Revista Año Fuente
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Capítulos de libros (WoS y Scopus)

# Título del capítulo Título del libro Autores Alcance Año ISBN Fuente
1Towards a Synthesis of Population Genomics and Epidemiology: Next-Generation Sequencing of Bacterial PathogensMolecular Medical Microbiology: Second EditionCastillo-Ramirez S., Feil E.J., Capítulo de un Libro20149780123971692Scopus-id: 2-s2.0-84961176055
2Population geneticsThe Prokaryotes: Prokaryotic Biology And Symbiotic AssociationsCastillo-Ramírez S., Feil E.J., Capítulo de un Libro20139783642301940Scopus-id: 2-s2.0-84929047904
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No se encuentran registros en la base de datos de obras con ISBN (Indautor).

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Proyectos

# Nombre Participantes Convocatoria Fecha Inicio Fecha Fin
1Microevolución y filogeografía de patógenos bacterianosSANTIAGO CASTILLO RAMIREZ,
Presupuesto de la UNAM asignado a la Dependencia01-12-201331-12-2020
2Variación filogeográfica del genoma accesorio del patógeno emergente Acinetobacter baumannii en MéxicoSANTIAGO CASTILLO RAMIREZ,
Recursos PAPIIT01-01-201731-12-2018
3Análisis filogenómico para estudiar la variación filogeográfica del genoma accesorio de Acinetobacter baumannii en México.SANTIAGO CASTILLO RAMIREZ,
Recursos CONAHCyT21-03-201807-02-2023
4Genómica evolutiva del resistoma de Acinetobacter baumannii en México.SANTIAGO CASTILLO RAMIREZ,
Recursos PAPIIT01-01-201931-12-2021
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Participación en Comités de Tesis

# Título del documento Tipo de Tesis Sinodales Autores Año Entidad Url
1La vida secreta de Acinetobacter Baumannii : epidemiología (PAN) génomica de aislados clínicos y no clínicos en el contexto de una saludTesis de DoctoradoSANTIAGO CASTILLO RAMIREZ; MARIA DOLORES ALCANTAR CURIEL; MARIA ESPERANZA MARTINEZ ROMERO; Mateo Estrada, Valeria Eréndira; 2024Centro de Ciencias Genómicas, Facultad de Medicina,
2Caracterización genómica del patógeno emergente Acinetobacter Baumannii en MéxicoTesis de DoctoradoSANTIAGO CASTILLO RAMIREZ; Graña Miraglia, Lucía; 2019Centro de Ciencias Genómicas,
3Genómica comparativa de una cepa mexicana de acinetobacter haemolyticusTesis de LicenciaturaSANTIAGO CASTILLO RAMIREZ; MIGUEL ANGEL CARLOS CEVALLOS GAOS; Castro Jaimes, María Semiramis; 2016Centro de Ciencias Genómicas,
4Análisis de la historia evolutiva del elemento genético móvil Staphylococcal Cassette ChromosomeTesis de LicenciaturaSANTIAGO CASTILLO RAMIREZ; Vargas Peralta, David; 2016Centro de Ciencias Genómicas,
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Docencia Impartida

# Entidad Nivel Asignatura Año Semestre Alumnos
1Instituto de BiotecnologíaMaestríaTRABAJO DE INVESTIGACIÓN III20232023-21
2Instituto de BiotecnologíaMaestríaTRABAJO DE INVESTIGACIÓN II20222023-11
3Instituto de BiotecnologíaLicenciaturaTRABAJO DE INVESTIGACION 120172018-11
4Instituto de BiotecnologíaLicenciaturaTRABAJO DE INVESTIGACION 220172018-11
5Instituto de BiotecnologíaLicenciaturaTRABAJO DE INVESTIGACION 320172018-11
6Instituto de BiotecnologíaLicenciaturaTOPICO SELECTO 120172018-11
7Instituto de BiotecnologíaLicenciaturaTOPICO SELECTO 220172018-11
8Instituto de BiotecnologíaLicenciaturaSEMINARIO DE INVESTIGACION 120172018-11
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No se encuentran registros en la base de datos de patentes.

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No se encuentran registros en la base de datos de libros completos (Humanindex).

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Capítulos de libros (Humanindex)

# Título del libro Título del capítulo ISBN Editorial Año Fuente